Title Iaseq: Integrating Multiple Sequencing Datasets for Detecting Allele-specific Events
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چکیده
October 4, 2013 Type Package Title iASeq: integrating multiple sequencing datasets for detecting allele-specific events Version 1.4.0 Date 2012-02-13 Author Yingying Wei, Hongkai Ji Maintainer Yingying Wei Description It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies. Depends R (>= 2.14.1) Imports graphics, grDevices License GPL-2 LazyLoad yes biocViews SNP, RNAseq, ChIPseq, Bioinformatics
منابع مشابه
Package 'iaseq' Title Iaseq: Integrating Multiple Sequencing Datasets for Detecting Allele-specific Events
November 21, 2016 Type Package Title iASeq: integrating multiple sequencing datasets for detecting allele-specific events Version 1.18.0 Date 2012-02-13 Author Yingying Wei, Hongkai Ji Maintainer Yingying Wei Description It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across s...
متن کاملPackage ‘ iASeq ’
April 25, 2017 Type Package Title iASeq: integrating multiple sequencing datasets for detecting allele-specific events Version 1.20.0 Date 2012-02-13 Author Yingying Wei, Hongkai Ji Maintainer Yingying Wei Description It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across stud...
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MOTIVATION Allele-specific expression (ASE) is a useful way to identify cis-acting regulatory variation, which provides opportunities to develop new therapeutic strategies that activate beneficial alleles or silence mutated alleles at specific loci. However, multiple problems hinder the identification of ASE in next-generation sequencing (NGS) data. RESULTS We developed cisASE, a likelihood-b...
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تاریخ انتشار 2013